4.1. Generating a hopping graph

• 4.1.1. Defining solvation sites — hop.sitemap
• 4.1.2. Generating densities from trajectories — hop.density
• 4.1.3. Using qhull to define regions for hopping analysis — hop.qhull
• 4.1.4. Generating the hopping trajectory — hop.trajectory
• 4.1.5. Generating and analyzing a hopping graph — hop.graph